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Università degli Studi di Parma Università degli Studi di Parma
Second cycle degree course in
Food safety and food risk management
Università degli Studi di Parma
Department of Food and Drug

INNOVATIVE APPROACH FOR RISK ASSESSMENT IN MICROBIOME FOOD VALUE CHAIN
cod. 1008431

borrowed from Corso di Laurea magistrale in FOOD SAFETY AND FOOD RISK MANAGEMENT - Innovative approach for risk assessment in microbiome food value chain - cod. 1008431
Academic year 2024/25
2° year of course - First semester
Professor
Silvia TURRONI
Academic discipline
Chimica e biotecnologia delle fermentazioni (CHIM/11)
Field
Attività formative affini o integrative
Type of training activity
Related/supplementary
24 hours
of face-to-face activities
3 credits
hub: -
course unit
in
lectures timetable
exam calls

Integrated course unit module: 295895

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Learning objectives

The successful student will know: (i) main goals of a metagenome study; (ii) techniques and technologies for the metagenomes assessment; (iii) role of microbiomes in food systems, food production and connections with food quality and the risk assessment.

Prerequisites

- - -

Course unit content

1. General Introduction the study of microbiomes: metagenomics, microbial ecosystems and microbiomes, definitions, importance and applications, main technical aspects, goals for a metagenome study, types of metagenome studies, NGS sequencing, second-and third-generation NGS platforms;
2. NGS sequencing: sampling, DNA extraction from different matrices (soil, air, water and biological samples), multiplexing and library preparation, NGS sequencing reaction; marker gene 16S sequencing and shotgun metagenomics;
3. bioinformatic and biostatistics: demultiplexing, quality filtering, reads mapping, contigues reconstruction, assignment on reference databases (KEGG, COGS, greengenes and SILVA, alpha and beta diversity), multivariate statistics
4. microbiomes in food system: microbiomes of the food system actors, microbiomes circulation in food systems and connection with food quality and safety, food system microbiome for a better food, microbiomes and risks assessment in foods and food production.

Full programme

- - -

Bibliography

Notes of lectures; scientific publications

Teaching methods

Oral lectures and scientific seminaries
Teaching tools
projector, computer, instruments of microbiological laboratory

Assessment methods and criteria

Theoretical knowledge will be tested in a oral examination

Other information

See the website of Marco Candela, Unibo

2030 agenda goals for sustainable development

- - -

Contacts

Toll-free number

800 904 084

Student's office

E. segreteria.scienzealimenti@unipr.it 
 

Quality assurance service 

Course quality assurance manager:
Dott.ssa Caterina Scopelliti
T. +39 0521 905969
E. service didattica.scienzealimenti@unipr.it
E. manager caterina.scopelliti@unipr.it

Course President

Prof.ssa Tullia Tedeschi
E. tullia.tedeschi@unipr.it 

Deputy Course President

Prof.ssa Valentina Bernini
E. valentina.bernini@unipr.it 

 

Delegate for guidance

Prof.ssa Emanuela Zanardi
E. emanula.zanardi@unipr.it 

Delegate for career guidance

Prof.ssa Francesca Bot
E. francesca.bot@unipr.it  

Delegate for tutoring

Prof.ssa Emanuela Zanardi
E. emanuela.zanardi@unipr.it 

Member of the International student mobility commission

Prof. Francesco Martelli
E. francesco.martelli@unipr.it  
 

Responsible for Course Quality Assurance (RAQ)

Prof.ssa Chiara Dall'Asta
E. chiara.dallasta@unipr.it

 

Contact person for students with disabilities, specific learning difficulties,(SpLD) or vulnerable groups

Prof.ssa Marilena Musci
E. marilena.musci@unipr.it 

 

Delegates for internships

Prof.ssa Tullia Tedeschi - Unipr
E. tullia.tedeschi@unipr.it 

Prof.ssa Paola Battilani - Università Sacro Cuore PC
E. paola.battilani@unipr.it

Prof. Pietro Rocculi - Unibo
E. pietro.rocculi3@unibo.it  

Prof. Emilio Stefani - Unimore
E. emilio.stefani@unipr.it

Prof. Nicola Marchetti - Unife
E. nicola.marchetti@unipr.it